IL_8EVP_106

3D structure

PDB id

8EVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EVP_106 not in the Motif Atlas

Homologous match to IL_5TBW_098

Geometric discrepancy: 0.0828

The information below is about IL_5TBW_098

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

8EVP|1|A1|G|2614
8EVP|1|A1|G|2615
*
8EVP|1|A1|C|2625
8EVP|1|A1|A|2626
8EVP|1|A1|C|2627

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AI

RPL10 isoform 1

Chain AT

60S ribosomal protein L21-A

Chain Ab

RPL29 isoform 1

Chain Ao

60S ribosomal protein L42-A