IL_8EVP_172

3D structure

PDB id

8EVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

GUA*UUUUC

Length

8 nucleotides

Bulged bases

8EVP|1|B5|U|260

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EVP_172 not in the Motif Atlas

Geometric match to IL_4V88_397

Geometric discrepancy: 0.1355

The information below is about IL_4V88_397

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

8EVP|1|B5|G|204
8EVP|1|B5|U|205
8EVP|1|B5|A|206
*
8EVP|1|B5|U|259
8EVP|1|B5|U|260
8EVP|1|B5|U|261
8EVP|1|B5|U|262
8EVP|1|B5|C|263

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BE

40S ribosomal protein S4-A

Chain BI

40S ribosomal protein S8-A