IL_8EVP_185

3D structure

PDB id

8EVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

GAUAC*GUAAUU

Length

11 nucleotides

Bulged bases

8EVP|1|B5|A|506

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EVP|1|B5|G|480
8EVP|1|B5|A|481
8EVP|1|B5|U|482
8EVP|1|B5|A|483
8EVP|1|B5|C|484
*
8EVP|1|B5|G|503
8EVP|1|B5|U|504
8EVP|1|B5|A|505
8EVP|1|B5|A|506
8EVP|1|B5|U|507
8EVP|1|B5|U|508

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BJ

40S ribosomal protein S9-A

Chain Be

40S ribosomal protein S30-A