IL_8EVP_235
3D structure
- PDB id
- 8EVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- GUCUAAC*GUAAUC
- Length
- 13 nucleotides
- Bulged bases
- 8EVP|1|B5|U|2099, 8EVP|1|B5|A|2124
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8EVP_235 not in the Motif Atlas
- Homologous match to IL_4V88_460
- Geometric discrepancy: 0.3741
- The information below is about IL_4V88_460
- Detailed Annotation
- 180 degree turn
- Broad Annotation
- No text annotation
- Motif group
- IL_77092.1
- Basepair signature
- cWW-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
8EVP|1|B5|G|2096
8EVP|1|B5|U|2097
8EVP|1|B5|C|2098
8EVP|1|B5|U|2099
8EVP|1|B5|A|2100
8EVP|1|B5|A|2101
8EVP|1|B5|C|2102
*
8EVP|1|B5|G|2121
8EVP|1|B5|U|2122
8EVP|1|B5|A|2123
8EVP|1|B5|A|2124
8EVP|1|B5|U|2125
8EVP|1|B5|C|2126
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BD
- RPS3 isoform 1
- Chain BT
- 40S ribosomal protein S19-A
- Chain BU
- RPS20 isoform 1
- Chain Bd
- RPS29A isoform 1
Coloring options: