IL_8EVP_274

3D structure

PDB id

8EVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

GUG*UUAUC

Length

8 nucleotides

Bulged bases

8EVP|1|B5|A|1979, 8EVP|1|B5|U|1980

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EVP|1|B5|G|1960
8EVP|1|B5|U|1961
8EVP|1|B5|G|1962
*
8EVP|1|B5|U|1977
8EVP|1|B5|U|1978
8EVP|1|B5|A|1979
8EVP|1|B5|U|1980
8EVP|1|B5|C|1981

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BQ

40S ribosomal protein S16-A

Chain BT

40S ribosomal protein S19-A

Chain BU

RPS20 isoform 1