IL_8EVP_277

3D structure

PDB id

8EVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

GU*ACU

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EVP_277 not in the Motif Atlas

Geometric match to IL_7A0S_083

Geometric discrepancy: 0.3244

The information below is about IL_7A0S_083

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

8EVP|1|EC|G|6891
8EVP|1|EC|U|6892
*
8EVP|1|EC|A|6938
8EVP|1|EC|C|6939
8EVP|1|EC|U|6940

Current chains

Chain EC

Internal ribosome entry site

Nearby chains

Chain A1

Large subunit ribosomal RNA; LSU rRNA