IL_8EVP_280

3D structure

PDB id

8EVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

UGUAUUGGUUACCCAUC*GUAAGGCUUUCA

Length

29 nucleotides

Bulged bases

8EVP|1|EC|U|6771, 8EVP|1|EC|U|6774, 8EVP|1|EC|C|6777, 8EVP|1|EC|C|6778, 8EVP|1|EC|U|6822

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EVP|1|EC|U|6766
8EVP|1|EC|G|6767
8EVP|1|EC|U|6768
8EVP|1|EC|A|6769
8EVP|1|EC|U|6770
8EVP|1|EC|U|6771
8EVP|1|EC|G|6772
8EVP|1|EC|G|6773
8EVP|1|EC|U|6774
8EVP|1|EC|U|6775
8EVP|1|EC|A|6776
8EVP|1|EC|C|6777
8EVP|1|EC|C|6778
8EVP|1|EC|C|6779
8EVP|1|EC|A|6780
8EVP|1|EC|U|6781
8EVP|1|EC|C|6782
*
8EVP|1|EC|G|6814
8EVP|1|EC|U|6815
8EVP|1|EC|A|6816
8EVP|1|EC|A|6817
8EVP|1|EC|G|6818
8EVP|1|EC|G|6819
8EVP|1|EC|C|6820
8EVP|1|EC|U|6821
8EVP|1|EC|U|6822
8EVP|1|EC|U|6823
8EVP|1|EC|C|6824
8EVP|1|EC|A|6825

Current chains

Chain EC

Internal ribosome entry site

Nearby chains

Chain A1

Large subunit ribosomal RNA; LSU rRNA

Chain E

RPL1A isoform 1