IL_8EVQ_092

3D structure

PDB id

8EVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated Ribosome bound with TSV IRES, eEF2, GDP, and sordarin, Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

UCAAAGU*AACCAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EVQ_092 not in the Motif Atlas

Homologous match to IL_8C3A_093

Geometric discrepancy: 0.0889

The information below is about IL_8C3A_093

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36973.8

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

8EVQ|1|A1|U|2211
8EVQ|1|A1|C|2212
8EVQ|1|A1|A|2213
8EVQ|1|A1|A|2214
8EVQ|1|A1|A|2215
8EVQ|1|A1|G|2216
8EVQ|1|A1|U|2217
*
8EVQ|1|A1|A|2228
8EVQ|1|A1|A|2229
8EVQ|1|A1|C|2230
8EVQ|1|A1|C|2231
8EVQ|1|A1|A|2232
8EVQ|1|A1|A|2233
8EVQ|1|A1|G|2234

Current chains

Chain A1

25S rRNA

Nearby chains

Chain Ai

60S ribosomal protein L36-A