IL_8EVQ_129

3D structure

PDB id

8EVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated Ribosome bound with TSV IRES, eEF2, GDP, and sordarin, Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

AAC*GUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EVQ_129 not in the Motif Atlas

Geometric match to IL_4LFB_061

Geometric discrepancy: 0.136

The information below is about IL_4LFB_061

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

8EVQ|1|A1|A|3016
8EVQ|1|A1|A|3017
8EVQ|1|A1|C|3018
*
8EVQ|1|A1|G|3036
8EVQ|1|A1|U|3037
8EVQ|1|A1|U|3038

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AB

60S ribosomal protein L3

Chain AH

60S ribosomal protein L9-A

Chain AV

60S ribosomal protein L23-A