IL_8EVQ_142

3D structure

PDB id

8EVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated Ribosome bound with TSV IRES, eEF2, GDP, and sordarin, Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

CUUG*CUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EVQ_142 not in the Motif Atlas

Geometric match to IL_6MWN_005

Geometric discrepancy: 0.1184

The information below is about IL_6MWN_005

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

8EVQ|1|A1|C|3235
8EVQ|1|A1|U|3236
8EVQ|1|A1|U|3237
8EVQ|1|A1|G|3238
*
8EVQ|1|A1|C|3249
8EVQ|1|A1|U|3250
8EVQ|1|A1|U|3251
8EVQ|1|A1|G|3252

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AO

60S ribosomal protein L16-A