IL_8EVQ_209
3D structure
- PDB id
- 8EVQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated Ribosome bound with TSV IRES, eEF2, GDP, and sordarin, Structure I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.72 Å
Loop
- Sequence
- CGA*UCUUUGG
- Length
- 10 nucleotides
- Bulged bases
- 8EVQ|1|B5|C|1096, 8EVQ|1|B5|U|1098, 8EVQ|1|B5|G|1100
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8EVQ_209 not in the Motif Atlas
- Homologous match to IL_4V88_437
- Geometric discrepancy: 0.129
- The information below is about IL_4V88_437
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_62898.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8EVQ|1|B5|C|1034
8EVQ|1|B5|G|1035
8EVQ|1|B5|A|1036
*
8EVQ|1|B5|U|1095
8EVQ|1|B5|C|1096
8EVQ|1|B5|U|1097
8EVQ|1|B5|U|1098
8EVQ|1|B5|U|1099
8EVQ|1|B5|G|1100
8EVQ|1|B5|G|1101
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BC
- RPS2 isoform 1
- Chain BL
- 40S ribosomal protein S11-A
- Chain BN
- 40S ribosomal protein S13
- Chain BV
- 40S ribosomal protein S21-A
- Chain BW
- RPS22A isoform 1
- Chain BX
- 40S ribosomal protein S23-A
- Chain Bb
- 40S ribosomal protein S27-A
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