IL_8EVQ_235

3D structure

PDB id

8EVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated Ribosome bound with TSV IRES, eEF2, GDP, and sordarin, Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

8EVQ|1|B5|C|1637, 8EVQ|1|B5|A|1766

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EVQ_235 not in the Motif Atlas

Geometric match to IL_5J7L_058

Geometric discrepancy: 0.114

The information below is about IL_5J7L_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

8EVQ|1|B5|C|1636
8EVQ|1|B5|C|1637
8EVQ|1|B5|G|1638
*
8EVQ|1|B5|C|1764
8EVQ|1|B5|A|1765
8EVQ|1|B5|A|1766
8EVQ|1|B5|G|1767

Current chains

Chain B5

18S rRNA

Nearby chains

Chain Ba

RPS26B isoform 1

Chain DC

Elongation factor 2

Chain EC

Taura syndrome virus (TSV) internal ribosome entry site (IRES) RNA