IL_8EVR_044

3D structure

PDB id

8EVR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

UUCC*GA

Length

6 nucleotides

Bulged bases

8EVR|1|A1|C|1016

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EVR_044 not in the Motif Atlas

Geometric match to IL_7RQB_096

Geometric discrepancy: 0.3035

The information below is about IL_7RQB_096

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_76223.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

10

Unit IDs

8EVR|1|A1|U|1014
8EVR|1|A1|U|1015
8EVR|1|A1|C|1016
8EVR|1|A1|C|1017
*
8EVR|1|A1|G|1035
8EVR|1|A1|A|1036

Current chains

Chain A1

25S rRNA

Nearby chains

Chain EC

TSV IRES