IL_8EVR_100

3D structure

PDB id

8EVR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

CAU*AUAG

Length

7 nucleotides

Bulged bases

8EVR|1|A1|A|2502

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EVR_100 not in the Motif Atlas

Geometric match to IL_5CCB_001

Geometric discrepancy: 0.228

The information below is about IL_5CCB_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

8EVR|1|A1|C|2444
8EVR|1|A1|A|2445
8EVR|1|A1|U|2446
*
8EVR|1|A1|A|2500
8EVR|1|A1|U|2501
8EVR|1|A1|A|2502
8EVR|1|A1|G|2503

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AG

60S ribosomal protein L8-A

Chain Ai

60S ribosomal protein L36-A

Chain E

RPL1A isoform 1