IL_8EVR_228

3D structure

PDB id

8EVR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

C(5MC)A(A2M)(A2M)UGCCUC(OMG)*CGCG

Length

16 nucleotides

Bulged bases

8EVR|1|A1|A2M|2281, 8EVR|1|A1|C|2287, 8EVR|1|A1|C|2306

QA status

Modified nucleotides: 5MC, A2M, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EVR_228 not in the Motif Atlas

Homologous match to IL_8C3A_095

Geometric discrepancy: 0.0927

The information below is about IL_8C3A_095

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

8EVR|1|A1|C|2277
8EVR|1|A1|5MC|2278
8EVR|1|A1|A|2279
8EVR|1|A1|A2M|2280
8EVR|1|A1|A2M|2281
8EVR|1|A1|U|2282
8EVR|1|A1|G|2283
8EVR|1|A1|C|2284
8EVR|1|A1|C|2285
8EVR|1|A1|U|2286
8EVR|1|A1|C|2287
8EVR|1|A1|OMG|2288
*
8EVR|1|A1|C|2304
8EVR|1|A1|G|2305
8EVR|1|A1|C|2306
8EVR|1|A1|G|2307

Current chains

Chain A1

25S rRNA

Nearby chains

Chain An

60S ribosomal protein L41-A