IL_8EVS_049
3D structure
- PDB id
- 8EVS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.62 Å
Loop
- Sequence
- UUAAG*CUAUA
- Length
- 10 nucleotides
- Bulged bases
- 8EVS|1|A1|U|1331
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8EVS_049 not in the Motif Atlas
- Homologous match to IL_8C3A_051
- Geometric discrepancy: 0.0605
- The information below is about IL_8C3A_051
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_89002.4
- Basepair signature
- cWW-tWH-cWW-L-cWW-tHS
- Number of instances in this motif group
- 15
Unit IDs
8EVS|1|A1|U|1167
8EVS|1|A1|U|1168
8EVS|1|A1|A|1169
8EVS|1|A1|A|1170
8EVS|1|A1|G|1171
*
8EVS|1|A1|C|1328
8EVS|1|A1|U|1329
8EVS|1|A1|A|1330
8EVS|1|A1|U|1331
8EVS|1|A1|A|1332
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain A3
- 5S ribosomal RNA; 5S rRNA
- Chain AF
- 60S ribosomal protein L7-A
- Chain AQ
- 60S ribosomal protein L18-A
- Chain Ae
- RPL32 isoform 1
- Chain Af
- 60S ribosomal protein L33-A
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