IL_8EVS_099
3D structure
- PDB id
- 8EVS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.62 Å
Loop
- Sequence
- AGA*UUU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary:
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8EVS_099 not in the Motif Atlas
- Geometric match to IL_4E5C_001
- Geometric discrepancy: 0.2974
- The information below is about IL_4E5C_001
- Detailed Annotation
- Isolated cWH basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_10892.2
- Basepair signature
- cWW-cHW-cWW
- Number of instances in this motif group
- 58
Unit IDs
8EVS|1|A1|A|2441
8EVS|1|A1|G|2442
8EVS|1|A1|A|2443
*
8EVS|1|A1|U|2504
8EVS|1|A1|U|2505
8EVS|1|A1|U|2506
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AG
- 60S ribosomal protein L8-A
- Chain AN
- 60S ribosomal protein L15-A
- Chain Ai
- 60S ribosomal protein L36-A
- Chain BB
- RPS1A isoform 1
Coloring options: