IL_8EVS_187

3D structure

PDB id

8EVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

GAUAC*GUAAUU

Length

11 nucleotides

Bulged bases

8EVS|1|B5|A|506

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EVS_187 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.3806

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

8EVS|1|B5|G|480
8EVS|1|B5|A|481
8EVS|1|B5|U|482
8EVS|1|B5|A|483
8EVS|1|B5|C|484
*
8EVS|1|B5|G|503
8EVS|1|B5|U|504
8EVS|1|B5|A|505
8EVS|1|B5|A|506
8EVS|1|B5|U|507
8EVS|1|B5|U|508

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BJ

40S ribosomal protein S9-A

Chain Be

40S ribosomal protein S30-A