IL_8EVS_191

3D structure

PDB id

8EVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

AGGGCAAG*CU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EVS_191 not in the Motif Atlas

Homologous match to IL_4V88_413

Geometric discrepancy: 0.1229

The information below is about IL_4V88_413

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

10

Unit IDs

8EVS|1|B5|A|550
8EVS|1|B5|G|551
8EVS|1|B5|G|552
8EVS|1|B5|G|553
8EVS|1|B5|C|554
8EVS|1|B5|A|555
8EVS|1|B5|A|556
8EVS|1|B5|G|557
*
8EVS|1|B5|C|587
8EVS|1|B5|U|588

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BC

RPS2 isoform 1

Chain BJ

40S ribosomal protein S9-A

Chain Be

40S ribosomal protein S30-A