IL_8EVS_209

3D structure

PDB id

8EVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

GUCAG*CUUGGAUU

Length

13 nucleotides

Bulged bases

8EVS|1|B5|G|913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EVS_209 not in the Motif Atlas

Homologous match to IL_4V88_434

Geometric discrepancy: 0.1332

The information below is about IL_4V88_434

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

8EVS|1|B5|G|895
8EVS|1|B5|U|896
8EVS|1|B5|C|897
8EVS|1|B5|A|898
8EVS|1|B5|G|899
*
8EVS|1|B5|C|910
8EVS|1|B5|U|911
8EVS|1|B5|U|912
8EVS|1|B5|G|913
8EVS|1|B5|G|914
8EVS|1|B5|A|915
8EVS|1|B5|U|916
8EVS|1|B5|U|917

Current chains

Chain B5

18S rRNA

Nearby chains

Chain A1

Large subunit ribosomal RNA; LSU rRNA

Chain BB

RPS1A isoform 1

Chain BO

40S ribosomal protein S14-A