IL_8EVS_215
3D structure
- PDB id
- 8EVS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.62 Å
Loop
- Sequence
- GGAGUAUG*UGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8EVS_215 not in the Motif Atlas
- Homologous match to IL_4V88_440
- Geometric discrepancy: 0.0937
- The information below is about IL_4V88_440
- Detailed Annotation
- 8x6 Sarcin-Ricin with inserted Y; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_41756.1
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
8EVS|1|B5|G|1111
8EVS|1|B5|G|1112
8EVS|1|B5|A|1113
8EVS|1|B5|G|1114
8EVS|1|B5|U|1115
8EVS|1|B5|A|1116
8EVS|1|B5|U|1117
8EVS|1|B5|G|1118
*
8EVS|1|B5|U|1129
8EVS|1|B5|G|1130
8EVS|1|B5|A|1131
8EVS|1|B5|A|1132
8EVS|1|B5|A|1133
8EVS|1|B5|C|1134
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain A1
- Large subunit ribosomal RNA; LSU rRNA
- Chain An
- 60S ribosomal protein L41-A
- Chain BX
- 40S ribosomal protein S23-A
Coloring options: