IL_8EVS_229

3D structure

PDB id

8EVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

C(5MC)A(A2M)(A2M)UGCCUC(OMG)*CGCG

Length

16 nucleotides

Bulged bases

8EVS|1|A1|A2M|2281, 8EVS|1|A1|C|2287, 8EVS|1|A1|C|2306

QA status

Modified nucleotides: 5MC, A2M, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EVS_229 not in the Motif Atlas

Homologous match to IL_8C3A_095

Geometric discrepancy: 0.0564

The information below is about IL_8C3A_095

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

8EVS|1|A1|C|2277
8EVS|1|A1|5MC|2278
8EVS|1|A1|A|2279
8EVS|1|A1|A2M|2280
8EVS|1|A1|A2M|2281
8EVS|1|A1|U|2282
8EVS|1|A1|G|2283
8EVS|1|A1|C|2284
8EVS|1|A1|C|2285
8EVS|1|A1|U|2286
8EVS|1|A1|C|2287
8EVS|1|A1|OMG|2288
*
8EVS|1|A1|C|2304
8EVS|1|A1|G|2305
8EVS|1|A1|C|2306
8EVS|1|A1|G|2307

Current chains

Chain A1

25S rRNA

Nearby chains

Chain An

60S ribosomal protein L41-A