IL_8EVT_058

3D structure

PDB id

8EVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) refined against a composite map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CGU*AGUG

Length

7 nucleotides

Bulged bases

8EVT|1|A1|G|1429

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EVT_058 not in the Motif Atlas

Homologous match to IL_8C3A_061

Geometric discrepancy: 0.0711

The information below is about IL_8C3A_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_73554.3

Basepair signature

cWW-cWS-cWW

Number of instances in this motif group

10

Unit IDs

8EVT|1|A1|C|1376
8EVT|1|A1|G|1377
8EVT|1|A1|U|1378
*
8EVT|1|A1|A|1428
8EVT|1|A1|G|1429
8EVT|1|A1|U|1430
8EVT|1|A1|G|1431

Current chains

Chain A1

25S rRNA

Nearby chains

Chain A4

5.8S ribosomal RNA; 5.8S rRNA

Chain AC

RPL4A isoform 1

Chain Aa

60S ribosomal protein L28

Chain Ae

RPL32 isoform 1