IL_8EVT_088

3D structure

PDB id

8EVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) refined against a composite map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UCAAAGU*AACCAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EVT_088 not in the Motif Atlas

Homologous match to IL_8C3A_093

Geometric discrepancy: 0.0851

The information below is about IL_8C3A_093

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36973.8

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

8EVT|1|A1|U|2211
8EVT|1|A1|C|2212
8EVT|1|A1|A|2213
8EVT|1|A1|A|2214
8EVT|1|A1|A|2215
8EVT|1|A1|G|2216
8EVT|1|A1|U|2217
*
8EVT|1|A1|A|2228
8EVT|1|A1|A|2229
8EVT|1|A1|C|2230
8EVT|1|A1|C|2231
8EVT|1|A1|A|2232
8EVT|1|A1|A|2233
8EVT|1|A1|G|2234

Current chains

Chain A1

25S rRNA

Nearby chains

Chain Ai

60S ribosomal protein L36-A

Chain Ao

60S ribosomal protein L42-A