3D structure

PDB id
8EVT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) refined against a composite map
Experimental method
ELECTRON MICROSCOPY
Resolution
2.2 Å

Loop

Sequence
CC*GUAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8EVT_151 not in the Motif Atlas
Geometric match to IL_5TBW_374
Geometric discrepancy: 0.1191
The information below is about IL_5TBW_374
Detailed Annotation
Minor groove platform
Broad Annotation
No text annotation
Motif group
IL_15052.2
Basepair signature
cWW-cWW-cWW-R
Number of instances in this motif group
8

Unit IDs

8EVT|1|A3|C|28
8EVT|1|A3|C|29
*
8EVT|1|A3|G|49
8EVT|1|A3|U|50
8EVT|1|A3|A|51
8EVT|1|A3|G|52

Current chains

Chain A3
5s rRNA

Nearby chains

Chain AD
RPL5 isoform 1
Chain AJ
RPL11A isoform 1

Coloring options:


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