IL_8EVT_163

3D structure

PDB id

8EVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) refined against a composite map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GAUUAAG*CGC

Length

10 nucleotides

Bulged bases

8EVT|1|B5|A|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EVT_163 not in the Motif Atlas

Homologous match to IL_4V88_387

Geometric discrepancy: 0.0777

The information below is about IL_4V88_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77761.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

8EVT|1|B5|G|42
8EVT|1|B5|A|43
8EVT|1|B5|U|44
8EVT|1|B5|U|45
8EVT|1|B5|A|46
8EVT|1|B5|A|47
8EVT|1|B5|G|48
*
8EVT|1|B5|C|431
8EVT|1|B5|G|432
8EVT|1|B5|C|433

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BX

40S ribosomal protein S23-A