IL_8EVT_189

3D structure

PDB id

8EVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) refined against a composite map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

AGGGCAAG*CU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EVT_189 not in the Motif Atlas

Geometric match to IL_4V88_413

Geometric discrepancy: 0.0825

The information below is about IL_4V88_413

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

10

Unit IDs

8EVT|1|B5|A|550
8EVT|1|B5|G|551
8EVT|1|B5|G|552
8EVT|1|B5|G|553
8EVT|1|B5|C|554
8EVT|1|B5|A|555
8EVT|1|B5|A|556
8EVT|1|B5|G|557
*
8EVT|1|B5|C|587
8EVT|1|B5|U|588

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BC

RPS2 isoform 1

Chain BJ

40S ribosomal protein S9-A

Chain Be

40S ribosomal protein S30-A