IL_8EVT_196

3D structure

PDB id

8EVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) refined against a composite map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UUG*CAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: UUG,CAA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EVT_196 not in the Motif Atlas

Geometric match to IL_4V88_448

Geometric discrepancy: 0.3902

The information below is about IL_4V88_448

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30342.2

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

10

Unit IDs

8EVT|1|B5|U|649
8EVT|1|B5|U|650
8EVT|1|B5|G|651
*
8EVT|1|B5|C|683
8EVT|1|B5|A|684
8EVT|1|B5|A|685

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BJ

40S ribosomal protein S9-A

Chain BW

RPS22A isoform 1