IL_8EVT_209

3D structure

PDB id

8EVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) refined against a composite map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GUCAG*CUUGGAUU

Length

13 nucleotides

Bulged bases

8EVT|1|B5|G|913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EVT_209 not in the Motif Atlas

Homologous match to IL_4V88_434

Geometric discrepancy: 0.1135

The information below is about IL_4V88_434

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

8EVT|1|B5|G|895
8EVT|1|B5|U|896
8EVT|1|B5|C|897
8EVT|1|B5|A|898
8EVT|1|B5|G|899
*
8EVT|1|B5|C|910
8EVT|1|B5|U|911
8EVT|1|B5|U|912
8EVT|1|B5|G|913
8EVT|1|B5|G|914
8EVT|1|B5|A|915
8EVT|1|B5|U|916
8EVT|1|B5|U|917

Current chains

Chain B5

18S rRNA

Nearby chains

Chain A1

Large subunit ribosomal RNA; LSU rRNA

Chain BB

RPS1A isoform 1

Chain BO

40S ribosomal protein S14-A