IL_8EVT_213
3D structure
- PDB id
- 8EVT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) refined against a composite map
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GGAU*GCAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8EVT_213 not in the Motif Atlas
- Homologous match to IL_4V88_438
- Geometric discrepancy: 0.0735
- The information below is about IL_4V88_438
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67085.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
8EVT|1|B5|G|1041
8EVT|1|B5|G|1042
8EVT|1|B5|A|1043
8EVT|1|B5|U|1044
*
8EVT|1|B5|G|1074
8EVT|1|B5|C|1075
8EVT|1|B5|A|1076
8EVT|1|B5|C|1077
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BA
- 40S ribosomal protein S0-A
- Chain BB
- RPS1A isoform 1
- Chain BN
- 40S ribosomal protein S13
- Chain Ba
- RPS26B isoform 1
- Chain Bb
- 40S ribosomal protein S27-A
Coloring options: