IL_8EVT_227

3D structure

PDB id

8EVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) refined against a composite map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GGAAGUCGG*CUGU(OMC)

Length

14 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EVT_227 not in the Motif Atlas

Homologous match to IL_8P9A_305

Geometric discrepancy: 0.0572

The information below is about IL_8P9A_305

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

8EVT|1|A1|G|1898
8EVT|1|A1|G|1899
8EVT|1|A1|A|1900
8EVT|1|A1|A|1901
8EVT|1|A1|G|1902
8EVT|1|A1|U|1903
8EVT|1|A1|C|1904
8EVT|1|A1|G|1905
8EVT|1|A1|G|1906
*
8EVT|1|A1|C|2333
8EVT|1|A1|U|2334
8EVT|1|A1|G|2335
8EVT|1|A1|U|2336
8EVT|1|A1|OMC|2337

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AB

60S ribosomal protein L3

Chain AV

60S ribosomal protein L23-A