IL_8EVT_229

3D structure

PDB id

8EVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) refined against a composite map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

C(5MC)A(A2M)(A2M)UGCCUC(OMG)*CGCG

Length

16 nucleotides

Bulged bases

8EVT|1|A1|A2M|2281, 8EVT|1|A1|C|2287, 8EVT|1|A1|C|2306

QA status

Modified nucleotides: 5MC, A2M, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EVT_229 not in the Motif Atlas

Homologous match to IL_8C3A_095

Geometric discrepancy: 0.1087

The information below is about IL_8C3A_095

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

8EVT|1|A1|C|2277
8EVT|1|A1|5MC|2278
8EVT|1|A1|A|2279
8EVT|1|A1|A2M|2280
8EVT|1|A1|A2M|2281
8EVT|1|A1|U|2282
8EVT|1|A1|G|2283
8EVT|1|A1|C|2284
8EVT|1|A1|C|2285
8EVT|1|A1|U|2286
8EVT|1|A1|C|2287
8EVT|1|A1|OMG|2288
*
8EVT|1|A1|C|2304
8EVT|1|A1|G|2305
8EVT|1|A1|C|2306
8EVT|1|A1|G|2307

Current chains

Chain A1

25S rRNA

Nearby chains

Chain An

60S ribosomal protein L41-A