IL_8EWB_066

3D structure

PDB id

8EWB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

CCU*AGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CCU,AGG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EWB_066 not in the Motif Atlas

Geometric match to IL_3W3S_003

Geometric discrepancy: 0.2318

The information below is about IL_3W3S_003

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.6

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

51

Unit IDs

8EWB|1|A1|C|1562
8EWB|1|A1|C|1563
8EWB|1|A1|U|1564
*
8EWB|1|A1|A|1575
8EWB|1|A1|G|1576
8EWB|1|A1|G|1577

Current chains

Chain A1

25S rRNA

Nearby chains

Chain A4

5.8S ribosomal RNA; 5.8S rRNA

Chain AX

60S ribosomal protein L25