IL_8EWB_106

3D structure

PDB id

8EWB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

GCU*GC

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EWB_106 not in the Motif Atlas

Geometric match to IL_9DFE_057

Geometric discrepancy: 0.3787

The information below is about IL_9DFE_057

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

8EWB|1|A1|G|2469
8EWB|1|A1|C|2470
8EWB|1|A1|U|2471
*
8EWB|1|A1|G|2475
8EWB|1|A1|C|2476

Current chains

Chain A1

25S rRNA

Nearby chains

Chain E

RPL1A isoform 1