IL_8EWB_239

3D structure

PDB id

8EWB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

8EWB|1|B5|C|1637, 8EWB|1|B5|A|1766

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EWB_239 not in the Motif Atlas

Homologous match to IL_4V88_463

Geometric discrepancy: 0.1176

The information below is about IL_4V88_463

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

8EWB|1|B5|C|1636
8EWB|1|B5|C|1637
8EWB|1|B5|G|1638
*
8EWB|1|B5|C|1764
8EWB|1|B5|A|1765
8EWB|1|B5|A|1766
8EWB|1|B5|G|1767

Current chains

Chain B5

18S rRNA

Nearby chains

Chain Ba

RPS26B isoform 1

Chain DC

Elongation factor 2

Chain EC

Taura syndrome virus (TSV) internal ribosome entry site (IRES) RNA