IL_8EWB_240
3D structure
- PDB id
- 8EWB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure III
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.87 Å
Loop
- Sequence
- G(OMC)CC*GUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8EWB_240 not in the Motif Atlas
- Geometric match to IL_4V88_464
- Geometric discrepancy: 0.1088
- The information below is about IL_4V88_464
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_65718.1
- Basepair signature
- cWW-cSH-cWS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
8EWB|1|B5|G|1638
8EWB|1|B5|OMC|1639
8EWB|1|B5|C|1640
8EWB|1|B5|C|1641
*
8EWB|1|B5|G|1760
8EWB|1|B5|U|1761
8EWB|1|B5|A|1762
8EWB|1|B5|A|1763
8EWB|1|B5|C|1764
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain A1
- Large subunit ribosomal RNA; LSU rRNA
- Chain An
- 60S ribosomal protein L41-A
- Chain DC
- Elongation factor 2
- Chain EC
- Taura syndrome virus (TSV) internal ribosome entry site (IRES) RNA
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