IL_8EWB_250

3D structure

PDB id

8EWB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

AGGAU*AGAAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EWB_250 not in the Motif Atlas

Homologous match to IL_4V88_474

Geometric discrepancy: 0.1189

The information below is about IL_4V88_474

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

8EWB|1|B5|A|1678
8EWB|1|B5|G|1679
8EWB|1|B5|G|1680
8EWB|1|B5|A|1681
8EWB|1|B5|U|1682
*
8EWB|1|B5|A|1719
8EWB|1|B5|G|1720
8EWB|1|B5|A|1721
8EWB|1|B5|A|1722
8EWB|1|B5|U|1723

Current chains

Chain B5

18S rRNA

Nearby chains

Chain AW

RPL24A isoform 1

Chain BG

40S ribosomal protein S6-A

Chain BI

40S ribosomal protein S8-A