IL_8EWB_275

3D structure

PDB id

8EWB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

G(OMU)G*CC

Length

5 nucleotides

Bulged bases

8EWB|1|B5|OMU|1269

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EWB_275 not in the Motif Atlas

Homologous match to IL_8C3A_455

Geometric discrepancy: 0.1184

The information below is about IL_8C3A_455

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

94

Unit IDs

8EWB|1|B5|G|1268
8EWB|1|B5|OMU|1269
8EWB|1|B5|G|1270
*
8EWB|1|B5|C|1440
8EWB|1|B5|C|1441

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BK

40S ribosomal protein S10-A

Chain Bd

RPS29A isoform 1

Chain Bf

Ubiquitin-40S ribosomal protein S31

Chain DC

Elongation factor 2