IL_8EWC_043
3D structure
- PDB id
- 8EWC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.45 Å
Loop
- Sequence
- GCGAAU*AAAC
- Length
- 10 nucleotides
- Bulged bases
- 8EWC|1|A1|G|1001
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8EWC_043 not in the Motif Atlas
- Homologous match to IL_8C3A_043
- Geometric discrepancy: 0.0736
- The information below is about IL_8C3A_043
- Detailed Annotation
- C-loop with bulged stacked A's
- Broad Annotation
- C-loop
- Motif group
- IL_02509.3
- Basepair signature
- cWW-cWS-cWW-cWW-R-cSH-tWH-R
- Number of instances in this motif group
- 6
Unit IDs
8EWC|1|A1|G|999
8EWC|1|A1|C|1000
8EWC|1|A1|G|1001
8EWC|1|A1|A|1002
8EWC|1|A1|A|1003
8EWC|1|A1|U|1004
*
8EWC|1|A1|A|1046
8EWC|1|A1|A|1047
8EWC|1|A1|A|1048
8EWC|1|A1|C|1049
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain A3
- 5S ribosomal RNA; 5S rRNA
- Chain AD
- RPL5 isoform 1
- Chain AI
- RPL10 isoform 1
- Chain AT
- 60S ribosomal protein L21-A
Coloring options: