IL_8EWC_057
3D structure
- PDB id
- 8EWC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.45 Å
Loop
- Sequence
- UCUAGACAG*CCGAA
- Length
- 14 nucleotides
- Bulged bases
- 8EWC|1|A1|A|1221
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8EWC_057 not in the Motif Atlas
- Geometric match to IL_4V9F_042
- Geometric discrepancy: 0.2316
- The information below is about IL_4V9F_042
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_99692.3
- Basepair signature
- cWW-tSS-tSH-L-R-R-L-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
8EWC|1|A1|U|1218
8EWC|1|A1|C|1219
8EWC|1|A1|U|1220
8EWC|1|A1|A|1221
8EWC|1|A1|G|1222
8EWC|1|A1|A|1223
8EWC|1|A1|C|1224
8EWC|1|A1|A|1225
8EWC|1|A1|G|1226
*
8EWC|1|A1|C|1283
8EWC|1|A1|C|1284
8EWC|1|A1|G|1285
8EWC|1|A1|A|1286
8EWC|1|A1|A|1287
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AS
- 60S ribosomal protein L20
- Chain Am
- Ubiquitin-60S ribosomal protein L40
Coloring options: