IL_8EWC_088

3D structure

PDB id

8EWC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

CGAUGG*UGUUGACG

Length

14 nucleotides

Bulged bases

8EWC|1|A1|U|2159, 8EWC|1|A1|U|2175, 8EWC|1|A1|C|2179

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EWC_088 not in the Motif Atlas

Homologous match to IL_5TBW_083

Geometric discrepancy: 0.063

The information below is about IL_5TBW_083

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_64509.1

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

2

Unit IDs

8EWC|1|A1|C|2156
8EWC|1|A1|G|2157
8EWC|1|A1|A|2158
8EWC|1|A1|U|2159
8EWC|1|A1|G|2160
8EWC|1|A1|G|2161
*
8EWC|1|A1|U|2173
8EWC|1|A1|G|2174
8EWC|1|A1|U|2175
8EWC|1|A1|U|2176
8EWC|1|A1|G|2177
8EWC|1|A1|A|2178
8EWC|1|A1|C|2179
8EWC|1|A1|G|2180

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AA

60S ribosomal protein L2-A

Chain Ap

60S ribosomal protein L43-A