IL_8EWC_120

3D structure

PDB id

8EWC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

CUC*GUG(A2M)G

Length

8 nucleotides

Bulged bases

8EWC|1|A1|G|2945

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EWC_120 not in the Motif Atlas

Geometric match to IL_5TBW_108

Geometric discrepancy: 0.1082

The information below is about IL_5TBW_108

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

8EWC|1|A1|C|2879
8EWC|1|A1|U|2880
8EWC|1|A1|C|2881
*
8EWC|1|A1|G|2943
8EWC|1|A1|U|2944
8EWC|1|A1|G|2945
8EWC|1|A1|A2M|2946
8EWC|1|A1|G|2947

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AB

60S ribosomal protein L3

Chain AV

60S ribosomal protein L23-A