IL_8EWC_239

3D structure

PDB id

8EWC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

G(OMC)CC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EWC_239 not in the Motif Atlas

Homologous match to IL_4V88_464

Geometric discrepancy: 0.122

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8EWC|1|B5|G|1638
8EWC|1|B5|OMC|1639
8EWC|1|B5|C|1640
8EWC|1|B5|C|1641
*
8EWC|1|B5|G|1760
8EWC|1|B5|U|1761
8EWC|1|B5|A|1762
8EWC|1|B5|A|1763
8EWC|1|B5|C|1764

Current chains

Chain B5

18S rRNA

Nearby chains

Chain A1

Large subunit ribosomal RNA; LSU rRNA

Chain An

60S ribosomal protein L41-A

Chain EC

internal ribosome entry site (IRES)