IL_8EWC_254

3D structure

PDB id

8EWC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

CAU*GUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EWC_254 not in the Motif Atlas

Geometric match to IL_3MOJ_002

Geometric discrepancy: 0.3439

The information below is about IL_3MOJ_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_73028.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8EWC|1|EC|C|6785
8EWC|1|EC|A|6786
8EWC|1|EC|U|6787
*
8EWC|1|EC|G|6809
8EWC|1|EC|U|6810
8EWC|1|EC|G|6811

Current chains

Chain EC

internal ribosome entry site (IRES)

Nearby chains

Chain Ao

60S ribosomal protein L42-A