IL_8EWC_255

3D structure

PDB id

8EWC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

UGU*ACA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: UGU,ACA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EWC_255 not in the Motif Atlas

Geometric match to IL_5UNE_006

Geometric discrepancy: 0.2956

The information below is about IL_5UNE_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_38565.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

12

Unit IDs

8EWC|1|EC|U|6852
8EWC|1|EC|G|6853
8EWC|1|EC|U|6854
*
8EWC|1|EC|A|6874
8EWC|1|EC|C|6875
8EWC|1|EC|A|6876

Current chains

Chain EC

internal ribosome entry site (IRES)

Nearby chains