3D structure

PDB id
8EYQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
30S_delta_ksgA_h44_inactive_conformation
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
GCA*UUCCC
Length
8 nucleotides
Bulged bases
8EYQ|1|A|C|934
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8EYQ_039 not in the Motif Atlas
Homologous match to IL_4LFB_037
Geometric discrepancy: 0.2385
The information below is about IL_4LFB_037
Detailed Annotation
Minor groove platform
Broad Annotation
No text annotation
Motif group
IL_47078.3
Basepair signature
cWW-cWS-L-cWW-L
Number of instances in this motif group
4

Unit IDs

8EYQ|1|A|G|933
8EYQ|1|A|C|934
8EYQ|1|A|A|935
*
8EYQ|1|A|U|1380
8EYQ|1|A|U|1381
8EYQ|1|A|C|1382
8EYQ|1|A|C|1383
8EYQ|1|A|C|1384

Current chains

Chain A
16S_rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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