IL_8EYQ_066

3D structure

PDB id

8EYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S_delta_ksgA_h44_inactive_conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AGAAU*GGAAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EYQ_066 not in the Motif Atlas

Homologous match to IL_4LFB_065

Geometric discrepancy: 0.1376

The information below is about IL_4LFB_065

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

8EYQ|1|A|A|673
8EYQ|1|A|G|674
8EYQ|1|A|A|675
8EYQ|1|A|A|676
8EYQ|1|A|U|677
*
8EYQ|1|A|G|713
8EYQ|1|A|G|714
8EYQ|1|A|A|715
8EYQ|1|A|A|716
8EYQ|1|A|U|717

Current chains

Chain A

16S_rRNA

Nearby chains

Chain F

30S ribosomal protein S6

Chain K

30S ribosomal protein S11

Chain R

30S ribosomal protein S18