IL_8EYT_013

3D structure

PDB id

8EYT (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S_delta_ksgA+KsgA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

8EYT|1|A|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EYT_013 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1354

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

8EYT|1|A|G|147
8EYT|1|A|G|148
8EYT|1|A|A|149
8EYT|1|A|U|150
8EYT|1|A|A|151
8EYT|1|A|A|152
8EYT|1|A|C|153
*
8EYT|1|A|G|168
8EYT|1|A|C|169
8EYT|1|A|U|170
8EYT|1|A|A|171
8EYT|1|A|A|172
8EYT|1|A|U|173
8EYT|1|A|A|174
8EYT|1|A|C|175

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

30S ribosomal protein S20