3D structure

PDB id
8EYT (explore in PDB, NAKB, or RNA 3D Hub)
Description
30S_delta_ksgA+KsgA complex
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
GGAUAAC*GCUAAUAC
Length
15 nucleotides
Bulged bases
8EYT|1|A|U|173
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8EYT_013 not in the Motif Atlas
Homologous match to IL_5J7L_012
Geometric discrepancy: 0.1354
The information below is about IL_5J7L_012
Detailed Annotation
tWH-tWH-tHW-tHW
Broad Annotation
No text annotation
Motif group
IL_80604.6
Basepair signature
cWW-cWW-tWH-tWH-tHW-tHW-cWW
Number of instances in this motif group
3

Unit IDs

8EYT|1|A|G|147
8EYT|1|A|G|148
8EYT|1|A|A|149
8EYT|1|A|U|150
8EYT|1|A|A|151
8EYT|1|A|A|152
8EYT|1|A|C|153
*
8EYT|1|A|G|168
8EYT|1|A|C|169
8EYT|1|A|U|170
8EYT|1|A|A|171
8EYT|1|A|A|172
8EYT|1|A|U|173
8EYT|1|A|A|174
8EYT|1|A|C|175

Current chains

Chain A
16S rRNA

Nearby chains

Chain T
30S ribosomal protein S20

Coloring options:


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