3D structure

PDB id
8EYT (explore in PDB, NAKB, or RNA 3D Hub)
Description
30S_delta_ksgA+KsgA complex
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
GAAGGG*CAUUGAC
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8EYT_024 not in the Motif Atlas
Geometric match to IL_5J7L_023
Geometric discrepancy: 0.0778
The information below is about IL_5J7L_023
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_70801.1
Basepair signature
cWW-cWW-L-R-tWW-L-R-L-cWW
Number of instances in this motif group
1

Unit IDs

8EYT|1|A|G|450
8EYT|1|A|A|451
8EYT|1|A|A|452
8EYT|1|A|G|453
8EYT|1|A|G|454
8EYT|1|A|G|455
*
8EYT|1|A|C|477
8EYT|1|A|A|478
8EYT|1|A|U|479
8EYT|1|A|U|480
8EYT|1|A|G|481
8EYT|1|A|A|482
8EYT|1|A|C|483

Current chains

Chain A
16S rRNA

Nearby chains

Chain P
30S ribosomal protein S16

Coloring options:


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