IL_8EYT_040

3D structure

PDB id

8EYT (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S_delta_ksgA+KsgA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UGA*UCA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: UGA,UCA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EYT_040 not in the Motif Atlas

Geometric match to IL_3SZX_003

Geometric discrepancy: 0.1027

The information below is about IL_3SZX_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

8EYT|1|A|U|921
8EYT|1|A|G|922
8EYT|1|A|A|923
*
8EYT|1|A|U|1532
8EYT|1|A|C|1533
8EYT|1|A|A|1534

Current chains

Chain A

16S rRNA

Nearby chains

Chain E

30S ribosomal protein S5